ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ah5A5 - ECOD Domain | ECOD

ECOD/Domains/e5ah5A5

e5ah5A5

UID: 002489573

PDB

Range: A:2-154,A:487-562
PDB: 5AH5 chain A(all domains)
UniProt: B9JQP8 (all domains)
Gene: agnB2

Molecule: LEUCINE--TRNA LIGASE

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1(2005.1.1.1)

Ligands

in contact, ≤ 4 Å

5'-O-(L-leucylsulfamoyl)adenosineLSS

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00133tRNA-synt_1

tRNA synthetases class I (I, L, M and V)

ClanCL0039HUP

External Links

ECOD PDB View: 5AH5 RCSB PDB: 5AH5 PDBe: 5AH5 UniProt: B9JQP8

Downloads

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