ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5y9xA1 - ECOD Domain | ECOD

ECOD/Domains/e5y9xA1

e5y9xA1

UID: 002491404

RepresentativePDB

Range: A:11-308
PDB: 5Y9X chain A(all domains)
UniProt: B3DUR4 (all domains)
Gene: Minf_1012

Molecule: Uncharacterized protein KdoO

3D Structure

Loading viewer...

Related Domains

Browse other domains in Kdo_hydroxy →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyKdo_hydroxy(10.12.1.45)

Ligands

in contact, ≤ 4 Å

Oxogluric acidAKG
drugDrugBank DB08845
Chloride ionCL
COBALT (II) IONCO

Pfam Families

PF11004Kdo_hydroxy

3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase

ClanCL0029Cupin

External Links

ECOD PDB View: 5Y9X RCSB PDB: 5Y9X PDBe: 5Y9X UniProt: B3DUR4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 4 additives (Acetate, Glycerin, Sulfate ion, …)

AcetateACT
DrugBank DB14511
GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.