ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ipjA1 - ECOD Domain | ECOD

ECOD/Domains/e6ipjA1

e6ipjA1

UID: 002492196

PDB

Range: A:289-494
PDB: 6IPJ chain A(all domains)
UniProt: Q9NP87 (all domains)
Gene: POLM

Molecule: DNA-directed DNA/RNA polymerase mu,DNA-directed DNA/RNA polymerase mu

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_thumb,DNA_pol_B_palm →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNucleotidyltransferase-like(316)

HH-groupNucleotidyltransferase(316.1)

TT-groupNucleotidyltransferase(316.1.1)

FFamilyDNA_pol_B_thumb,DNA_pol_B_palm(316.1.1.24)

Ligands

in contact, ≤ 4 Å

Thymidine 5'-triphosphateTTP
drugDrugBank DB02452
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14791DNA_pol_B_thumb

DNA polymerase beta thumb

PF14792DNA_pol_B_palm

DNA polymerase beta palm

ClanCL0260NTP_transf

External Links

ECOD PDB View: 6IPJ RCSB PDB: 6IPJ PDBe: 6IPJ UniProt: Q9NP87

Downloads

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