ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5urbA2 - ECOD Domain | ECOD

ECOD/Domains/e5urbA2

e5urbA2

UID: 002494776

PDB

Range: A:1-114,A:187-323
PDB: 5URB chain A(all domains)
UniProt: A0A0D5YKJ7 (all domains)
Gene: metG

Molecule: Methionine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1g →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1g(2005.1.1.29)

Ligands

in contact, ≤ 4 Å

MethionineMET
drugDrugBank DB00134
Sodium ionNA
metal

+ 2 additives (Nitrate, 1,2-ETHANEDIOL)

NitrateNO3

Pfam Families

PF09334tRNA-synt_1g

tRNA synthetases class I (M)

ClanCL0039HUP

External Links

ECOD PDB View: 5URB RCSB PDB: 5URB PDBe: 5URB UniProt: A0A0D5YKJ7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14049

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.