ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5urbB1 - ECOD Domain | ECOD

ECOD/Domains/e5urbB1

e5urbB1

UID: 002494779

PDB

Range: B:324-546
PDB: 5URB chain B(all domains)
UniProt: A0A0D5YKJ7 (all domains)
Gene: metG

Molecule: Methionine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1g,Anticodon_3 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupAnticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases(140)

HH-groupAnticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases(140.1)

TT-groupAnticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases(140.1.1)

FFamilytRNA-synt_1g,Anticodon_3(140.1.1.8)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 2 additives (Nitrate, 1,2-ETHANEDIOL)

NitrateNO3
DrugBank DB14049
1,2-ETHANEDIOLEDO

Pfam Families

PF09334tRNA-synt_1g

tRNA synthetases class I (M)

ClanCL0039HUP

PF19303Anticodon_3

Anticodon binding domain of methionyl tRNA ligase

ClanCL0258DALR

External Links

ECOD PDB View: 5URB RCSB PDB: 5URB PDBe: 5URB UniProt: A0A0D5YKJ7

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.