ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6a2eA1 - ECOD Domain | ECOD

ECOD/Domains/e6a2eA1

e6a2eA1

UID: 002494907

PDB

Range: A:11-307
PDB: 6A2E chain A(all domains)
UniProt: B3DUR4 (all domains)
Gene: Minf_1012

Molecule: Kdo hydroxylase, KdoO

3D Structure

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Related Domains

Browse other domains in Kdo_hydroxy →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyKdo_hydroxy(10.12.1.45)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Acetate, Sulfate ion, Tetraethylene glycol)

AcetateACT
DrugBank DB14511
Sulfate ionSO4
DrugBank DB14546
Tetraethylene glycol

Pfam Families

PF11004Kdo_hydroxy

3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase

ClanCL0029Cupin

External Links

ECOD PDB View: 6A2E RCSB PDB: 6A2E PDBe: 6A2E UniProt: B3DUR4

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.