ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yadB1 - ECOD Domain | ECOD

ECOD/Domains/e5yadB1

e5yadB1

UID: 002495053

PDB

Range: B:3-73
PDB: 5YAD chain B(all domains)
UniProt: Q8BJ34 (all domains)
Gene: Marf1

Molecule: Meiosis regulator and mRNA stability factor 1

3D Structure

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Related Domains

Browse other domains in MARF1_LOTUS →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyMARF1_LOTUS(101.1.2.177)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF19687MARF1_LOTUS

MARF1 LOTUS domain

ClanCL0123HTH

External Links

ECOD PDB View: 5YAD RCSB PDB: 5YAD PDBe: 5YAD UniProt: Q8BJ34

Downloads

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