ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yvzA1 - ECOD Domain | ECOD

ECOD/Domains/e5yvzA1

e5yvzA1

UID: 002495070

PDB

Range: A:11-307
PDB: 5YVZ chain A(all domains)
UniProt: B3DUR4 (all domains)
Gene: Minf_1012

Molecule: Uncharacterized protein KdoO

3D Structure

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Related Domains

Browse other domains in Kdo_hydroxy →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyKdo_hydroxy(10.12.1.45)

Ligands

in contact, ≤ 4 Å

Oxogluric acidAKG
drugDrugBank DB08845
FE (III) IONFE
metal

+ 4 additives (Acetate, Glycerin, Sulfate ion, …)

Pfam Families

PF11004Kdo_hydroxy

3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase

ClanCL0029Cupin

External Links

ECOD PDB View: 5YVZ RCSB PDB: 5YVZ PDBe: 5YVZ UniProt: B3DUR4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

AcetateACT

DrugBank DB14511

GlycerinGOL

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.