ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y9iA1 - ECOD Domain | ECOD

ECOD/Domains/e5y9iA1

e5y9iA1

UID: 002495148

PDB

Range: A:11-307
PDB: 5Y9I chain A(all domains)
UniProt: B3DUR4 (all domains)
Gene: Minf_1012

Molecule: Uncharacterized protein KdoO

3D Structure

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Related Domains

Browse other domains in Kdo_hydroxy →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyKdo_hydroxy(10.12.1.45)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
COBALT (II) IONCO
metal

+ 3 additives (Acetate, Sulfate ion, octyl beta-D-glucopyranoside)

AcetateACT

Pfam Families

PF11004Kdo_hydroxy

3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase

ClanCL0029Cupin

External Links

ECOD PDB View: 5Y9I RCSB PDB: 5Y9I PDBe: 5Y9I UniProt: B3DUR4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Sulfate ionSO4

DrugBank DB14546

octyl beta-D-glucopyranosideBOG

Shown in the structure viewer. Drug annotations from DrugDomain.