ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y9yA1 - ECOD Domain | ECOD

ECOD/Domains/e5y9yA1

e5y9yA1

UID: 002495149

PDB

Range: A:11-307
PDB: 5Y9Y chain A(all domains)
UniProt: B3DUR4 (all domains)
Gene: Minf_1012

Molecule: Uncharacterized protein KdoO

3D Structure

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Related Domains

Browse other domains in Kdo_hydroxy →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyKdo_hydroxy(10.12.1.45)

Ligands

in contact, ≤ 4 Å

Succinic acidSIN
drugDrugBank DB00139
Chloride ionCL
COBALT (II) IONCO

Pfam Families

PF11004Kdo_hydroxy

3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase

ClanCL0029Cupin

External Links

ECOD PDB View: 5Y9Y RCSB PDB: 5Y9Y PDBe: 5Y9Y UniProt: B3DUR4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 4 additives (Acetate, Glycerin, Sulfate ion, …)

AcetateACT
DrugBank DB14511
GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.