ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6nzkC3 - ECOD Domain | ECOD

ECOD/Domains/e6nzkC3

e6nzkC3

UID: 002495338

PDB

Range: C:15-314
PDB: 6NZK chain C(all domains)
UniProt: Q696P8 (all domains)
Gene: S

Molecule: Spike surface glycoprotein

3D Structure

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Related Domains

Browse other domains in bCoV_S1_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilybCoV_S1_N(10.1.1.39)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
methyl 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acidMJJ

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF16451bCoV_S1_N

Betacoronavirus-like spike glycoprotein S1, N-terminal

ClanCL0004Concanavalin

External Links

ECOD PDB View: 6NZK RCSB PDB: 6NZK PDBe: 6NZK UniProt: Q696P8

Downloads

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