ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6go5B1 - ECOD Domain | ECOD

ECOD/Domains/e6go5B1

e6go5B1

UID: 002496422

PDB

Range: B:303-511
PDB: 6GO5 chain B(all domains)
UniProt: Q9JIW4 (all domains)
Gene: Polm

Molecule: DNA nucleotidylexotransferase,DNA-directed DNA/RNA polymerase mu,DNA nucleotidylexotransferase

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_thumb,DNA_pol_B_palm →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNucleotidyltransferase-like(316)

HH-groupNucleotidyltransferase(316.1)

TT-groupNucleotidyltransferase(316.1.1)

FFamilyDNA_pol_B_thumb,DNA_pol_B_palm(316.1.1.24)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidineXC5

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14791DNA_pol_B_thumb

DNA polymerase beta thumb

PF14792DNA_pol_B_palm

DNA polymerase beta palm

ClanCL0260NTP_transf

External Links

ECOD PDB View: 6GO5 RCSB PDB: 6GO5 PDBe: 6GO5 UniProt: Q9JIW4

Downloads

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