ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6o64H2 - ECOD Domain | ECOD

ECOD/Domains/e6o64H2

e6o64H2

UID: 002496616

PDB

Range: H:106-333
PDB: 6O64 chain H(all domains)
UniProt: O48661 (all domains)
Gene: SPDSYN2

Molecule: Spermidine synthase 2

3D Structure

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Related Domains

Browse other domains in Spermine_synth →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilySpermine_synth(2003.1.5.13)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Malonate Ion, Acetate ion)

Malonate IonMLI
DrugBank DB02201
Acetate ionACT

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01564Spermine_synth

Spermine/spermidine synthase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6O64 RCSB PDB: 6O64 PDBe: 6O64 UniProt: O48661

Downloads

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