ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6qlvC1 - ECOD Domain | ECOD

ECOD/Domains/e6qlvC1

e6qlvC1

UID: 002496717

PDB

Range: C:2-194
PDB: 6QLV chain C(all domains)
UniProt: A0A072ZCW8 (all domains)
Gene: ubiX

Molecule: Flavin prenyltransferase UbiX

3D Structure

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Related Domains

Browse other domains in Flavoprotein →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHomo-oligomeric flavin-containing Cys decarboxylases, HFCD(7564)

HH-groupHomo-oligomeric flavin-containing Cys decarboxylases, HFCD(7564.1)

TT-groupHomo-oligomeric flavin-containing Cys decarboxylases, HFCD(7564.1.1)

FFamilyFlavoprotein(7564.1.1.1)

Ligands

in contact, ≤ 4 Å

Flavin mononucleotideFMN
drugDrugBank DB03247
[(2~{R},3~{S},4~{S})-5-[5-[(2~{Z})-3,7-dimethylocta-2,6-dienyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-1~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphateHJN

Pfam Families

PF02441Flavoprotein

Flavoprotein

External Links

ECOD PDB View: 6QLV RCSB PDB: 6QLV PDBe: 6QLV UniProt: A0A072ZCW8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

[(2~{Z})-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate

Sodium ionNA

metal

+ 2 additives (Acetate, Phosphate ion)

AcetateACT
DrugBank DB14511
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.