ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6drdL1 - ECOD Domain | ECOD

ECOD/Domains/e6drdL1

e6drdL1

UID: 002496800

PDB

Range: L:15-58
PDB: 6DRD chain L(all domains)
UniProt: P53803 (all domains)
Gene: POLR2K

Molecule: DNA-directed RNA polymerases I, II, and III subunit RPABC4

3D Structure

Loading viewer...

Related Domains

Browse other domains in DNA_RNApol_7kD →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyDNA_RNApol_7kD(375.1.1.22)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03604Zn_ribbon_RPAB4

DNA directed RNA polymerase, 7 kDa subunit

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 6DRD RCSB PDB: 6DRD PDBe: 6DRD UniProt: P53803

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure