ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6gkkB1 - ECOD Domain | ECOD

ECOD/Domains/e6gkkB1

e6gkkB1

UID: 002504687

PDB

Range: B:28-217
PDB: 6GKK chain B(all domains)
UniProt: P63073 (all domains)
Gene: Eif4e

Molecule: Eukaryotic translation initiation factor 4E

3D Structure

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Related Domains

Browse other domains in IF4E →

Classification

AArchitecturea+b two layers(a.11)

XX-groupTranslation initiation factor eIF4e and phosphothreonine lyase(317)

HH-groupTranslation initiation factor eIF4e and phosphothreonine lyase(317.1)

TT-groupTranslation initiation factor eIF4e and phosphothreonine lyase(317.1.1)

FFamilyIF4E(317.1.1.1)

Ligands

in contact, ≤ 4 Å

[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-7-ium-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl [phosphonooxy(sulfanyl)phosphoryl] hydrogen phosphateWZO

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

Eukaryotic initiation factor 4E

ClanCL0625eIF4e

External Links

ECOD PDB View: 6GKK RCSB PDB: 6GKK PDBe: 6GKK UniProt: P63073

Downloads

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Drug annotations from DrugDomain.