ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6o5xB1 - ECOD Domain | ECOD

ECOD/Domains/e6o5xB1

e6o5xB1

UID: 002504951

PDB

Range: B:1-99
PDB: 6O5X chain B(all domains)
UniProt: I7BFC3 (all domains)
Gene: pol

Molecule: HIV-1 protease PR-S17

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide0Q4
Chloride ionCL
Sodium ionNA
metal

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 6O5X RCSB PDB: 6O5X PDBe: 6O5X UniProt: I7BFC3

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.