ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6o82D1 - ECOD Domain | ECOD

ECOD/Domains/e6o82D1

e6o82D1

UID: 002505048

PDB

Range: D:1-76
PDB: 6O82 chain D(all domains)
UniProt: P0CH07 (all domains)
Gene: uep1

Molecule: Ubiquitin-60S ribosomal protein L40

3D Structure

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Related Domains

Browse other domains in ubiquitin →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyubiquitin(221.1.1.2)

Ligands

in contact, ≤ 4 Å

5'-deoxy-5'-(sulfamoylamino)adenosineJZU

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00240ubiquitin

Ubiquitin family

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 6O82 RCSB PDB: 6O82 PDBe: 6O82 UniProt: P0CH07

Downloads

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