ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6o83A2 - ECOD Domain | ECOD

ECOD/Domains/e6o83A2

e6o83A2

UID: 002505050

PDB

Range: A:395-761,A:783-902
PDB: 6O83 chain A(all domains)
UniProt: O94609 (all domains)
Gene: ptr3

Molecule: Ubiquitin-activating enzyme E1 1

3D Structure

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Related Domains

Browse other domains in ThiF+UBA_E1_SCCH →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupActivating enzymes of the ubiquitin-like proteins(2003.1.9)

FFamilyThiF+UBA_E1_SCCH(2003.1.9.4)

Ligands

in contact, ≤ 4 Å

5'-{[(3-aminopropyl)sulfonyl]amino}-5'-deoxyadenosineVMX

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Tromethamine)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Tromethamine

Pfam Families

ThiF family

ClanCL0063NADP_Rossmann

PF10585UBA_E1_SCCH

Ubiquitin-activating enzyme, SCCH domain

External Links

ECOD PDB View: 6O83 RCSB PDB: 6O83 PDBe: 6O83 UniProt: O94609

Downloads

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DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.