ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6p0xB1 - ECOD Domain | ECOD

ECOD/Domains/e6p0xB1

e6p0xB1

UID: 002505092

PDB

Range: B:34-353
PDB: 6P0X chain B(all domains)
UniProt: H9L477 (all domains)
Gene: spvB

Molecule: Salmonella plasmid virulence: SpvB

3D Structure

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Related Domains

Browse other domains in SpvB →

Classification

AArchitecturebeta meanders(a.2)

XX-groupRearrangement hotspot (RHS) repeats protein(3735)

HH-groupRearrangement hotspot (RHS) repeats protein(3735.1)

TT-groupRearrangement hotspot (RHS) repeats protein(3735.1.1)

FFamilySpvB(3735.1.1.1)

Ligands

in contact, ≤ 4 Å

Acrylic AcidAKR
drugDrugBank DB02579

+ 2 additives (Glycerin, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL)

GlycerinGOL
DrugBank DB09462

Pfam Families

Salmonella virulence plasmid 65kDa B protein

External Links

ECOD PDB View: 6P0X RCSB PDB: 6P0X PDBe: 6P0X UniProt: H9L477

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOLBTB

Shown in the structure viewer. Drug annotations from DrugDomain.