ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6rtdA1 - ECOD Domain | ECOD

ECOD/Domains/e6rtdA1

e6rtdA1

UID: 002505319

PDB

Range: A:82-468
PDB: 6RTD chain A(all domains)
UniProt: Q9I609 (all domains)
Gene: nirN

Molecule: Cytochrome c

3D Structure

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Related Domains

Browse other domains in Cytochrom_D1 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group8-bladed(5.1.5)

FFamilyCytochrom_D1(5.1.5.9)

Ligands

in contact, ≤ 4 Å

Heme DDHE
drugDrugBank DB03469
Ferroheme CHEC
drugDrugBank DB03317

+ 1 additive ((R,R)-2,3-BUTANEDIOL)

Pfam Families

PF02239Cytochrom_D1

Cytochrome D1 heme domain

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 6RTD RCSB PDB: 6RTD PDBe: 6RTD UniProt: Q9I609

Downloads

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(R,R)-2,3-BUTANEDIOLBU3

Shown in the structure viewer. Drug annotations from DrugDomain.