ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ducB2 - ECOD Domain | ECOD

ECOD/Domains/e6ducB2

e6ducB2

UID: 002506912

PDB

Range: B:2-200
PDB: 6DUC chain B(all domains)
UniProt: P0A2K1 (all domains)
Gene: trpB

Molecule: Tryptophan synthase beta chain

3D Structure

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Related Domains

Browse other domains in PALP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4)

TT-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4.1)

FFamilyPALP(2003.4.1.1)

Ligands

in contact, ≤ 4 Å

2-({[4-(TRIFLUOROMETHOXY)PHENYL]SULFONYL}AMINO)ETHYL DIHYDROGEN PHOSPHATEF9F
drugDrugBank DB07748
(2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)imino]-3-[(2-hydroxyphenyl)amino]propanoic acid1D0

Pfam Families

Pyridoxal-phosphate dependent enzyme

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6DUC RCSB PDB: 6DUC PDBe: 6DUC UniProt: P0A2K1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-AMINOPYRIDINE

Chloride ionCL

Cesium ionCS

metal

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.