ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6e54A1 - ECOD Domain | ECOD

ECOD/Domains/e6e54A1

e6e54A1

UID: 002508372

PDB

Range: A:0-299
PDB: 6E54 chain A(all domains)
UniProt: P47205 (all domains)
Gene: lpxC

Molecule: UDP-3-O-acyl-N-acetylglucosamine deacetylase

3D Structure

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Related Domains

Browse other domains in LpxC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyLpxC(212.1.1.15)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
(2S)-4-{4-[4-(benzyloxy)-2-fluorophenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamideHUM
(2R)-4-{4-[4-(benzyloxy)-2-fluorophenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamideJCG

Pfam Families

UDP-3-O-acyl N-acetylglycosamine deacetylase

ClanCL0329S5

External Links

ECOD PDB View: 6E54 RCSB PDB: 6E54 PDBe: 6E54 UniProt: P47205

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ionZN

metal

Calcium ionCA

metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.