ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6j28B1 - ECOD Domain | ECOD

ECOD/Domains/e6j28B1

e6j28B1

UID: 002508514

PDB

Range: B:97-354
PDB: 6J28 chain B(all domains)
UniProt: Q72L89 (all domains)
Gene: bpsA

Molecule: N(4)-bis(aminopropyl)spermidine synthase

3D Structure

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Related Domains

Browse other domains in BpsA_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyBpsA_C(2003.1.5.18)

Ligands

in contact, ≤ 4 Å

5'-S-methyl-5'-thioadenosineMTA
drugDrugBank DB02282
FE (III) IONFE
metal
N,N-bis(3-aminopropyl)butane-1,4-diamine

Pfam Families

Branched-chain polyamine synthase A C-terminal domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6J28 RCSB PDB: 6J28 PDBe: 6J28 UniProt: Q72L89

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.