ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6jimB1 - ECOD Domain | ECOD

ECOD/Domains/e6jimB1

e6jimB1

UID: 002512657

PDB

Range: B:177-335
PDB: 6JIM chain B(all domains)
UniProt: A0A076V769 (all domains)

Molecule: helicase

3D Structure

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Related Domains

Browse other domains in Viral_helicase1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyViral_helicase1(2004.1.1.62)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Aluminum ionAL
metal
Chloride ion

Pfam Families

PF01443Viral_helicase1

Viral superfamily 1 RNA helicase core domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6JIM RCSB PDB: 6JIM PDBe: 6JIM UniProt: A0A076V769

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Fluoride ionF

Magnesium ionMG

metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.