ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6jf1A1 - ECOD Domain | ECOD

ECOD/Domains/e6jf1A1

e6jf1A1

UID: 002512832

PDB

Range: A:-21--12,A:-2-115,A:238-284
PDB: 6JF1 chain A(all domains)
UniProt: A0A0H2UN92 (all domains)
Gene: SP_0149

Molecule: Lipoprotein

3D Structure

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Related Domains

Browse other domains in Lipoprotein_9 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLipoprotein_9(7523.1.1.13)

Ligands

in contact, ≤ 4 Å

MethionineMET
drugDrugBank DB00134
Chloride ionCL
Zinc ionZN

Pfam Families

PF03180Lipoprotein_9

NlpA lipoprotein

ClanCL0177PBP

External Links

ECOD PDB View: 6JF1 RCSB PDB: 6JF1 PDBe: 6JF1 UniProt: A0A0H2UN92

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Acetate, Glycerin)

AcetateACT
DrugBank DB14511
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.