ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6njyA1 - ECOD Domain | ECOD

ECOD/Domains/e6njyA1

e6njyA1

UID: 002512866

PDB

Range: A:108-229
PDB: 6NJY chain A(all domains)
UniProt: F3ZXK6 (all domains)
Gene: Mahau_2538

Molecule: Type IV CRISPR associated Cas6 RNA endonuclease

3D Structure

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Related Domains

Browse other domains in CRISPR_Cas6 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyCRISPR_Cas6(304.51.1.7)

Ligands

in contact, ≤ 4 Å

Beta-D-GlucoseBGC
drugDrugBank DB02379

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF10040CRISPR_Cas6

CRISPR-associated endoribonuclease Cas6

ClanCL0362RAMPS-Cas5-like

External Links

ECOD PDB View: 6NJY RCSB PDB: 6NJY PDBe: 6NJY UniProt: F3ZXK6

Downloads

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