ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6mdxA1 - ECOD Domain | ECOD

ECOD/Domains/e6mdxA1

e6mdxA1

UID: 002516000

PDB

Range: A:158-214
PDB: 6MDX chain A(all domains)
UniProt: Q9H040 (all domains)
Gene: SPRTN

Molecule: SprT-like domain-containing protein Spartan

3D Structure

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Related Domains

Browse other domains in SPRTN_ZBD →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupZinc binding domain of metalloprotease Spartan(7056)

HH-groupZinc binding domain of metalloprotease Spartan(7056.1)

TT-groupZinc binding domain of metalloprotease Spartan(7056.1.1)

FFamilySPRTN_ZBD(7056.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 3 additives (Triethylene glycol, 1,2-ETHANEDIOL, Citrate anion)

Triethylene glycolPGE
DrugBank DB02327
1,2-ETHANEDIOL

Pfam Families

PF22934SPRTN_ZBD

Spartan-like zinc binding domain

External Links

ECOD PDB View: 6MDX RCSB PDB: 6MDX PDBe: 6MDX UniProt: Q9H040

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Citrate anionFLC

Shown in the structure viewer. Drug annotations from DrugDomain.