ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6mdxA2 - ECOD Domain | ECOD

ECOD/Domains/e6mdxA2

e6mdxA2

UID: 002516001

PDB

Range: A:28-157
PDB: 6MDX chain A(all domains)
UniProt: Q9H040 (all domains)
Gene: SPRTN

Molecule: SprT-like domain-containing protein Spartan

3D Structure

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Related Domains

Browse other domains in SprT-like →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilySprT-like(2498.1.1.39)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 3 additives (Triethylene glycol, Citrate anion, 1,2-ETHANEDIOL)

Triethylene glycolPGE
DrugBank DB02327
Citrate anionFLC

Pfam Families

PF10263SprT-like

SprT-like family

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 6MDX RCSB PDB: 6MDX PDBe: 6MDX UniProt: Q9H040

Downloads

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1,2-ETHANEDIOLEDO

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.