ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6j9eD1 - ECOD Domain | ECOD

ECOD/Domains/e6j9eD1

e6j9eD1

UID: 002516306

PDB

Range: D:897-933,D:1215-1371
PDB: 6J9E chain D(all domains)
UniProt: B2SQQ2 (all domains)
Gene: rpoC

Molecule: DNA-directed RNA polymerase subunit beta'

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_5 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954)

HH-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954.1)

TT-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954.1.1)

FFamilyRNA_pol_Rpb1_5(4954.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04998RNA_pol_Rpb1_5

RNA polymerase Rpb1, domain 5

External Links

ECOD PDB View: 6J9E RCSB PDB: 6J9E PDBe: 6J9E UniProt: B2SQQ2

Downloads

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