ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6n10A1 - ECOD Domain | ECOD

ECOD/Domains/e6n10A1

e6n10A1

UID: 002516419

PDB

Range: A:3-198
PDB: 6N10 chain A(all domains)
UniProt: O23722 (all domains)
Gene: MVD1

Molecule: Diphosphomevalonate decarboxylase MVD1, peroxisomal

3D Structure

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Related Domains

Browse other domains in MVD-like_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyMVD-like_N(212.1.1.25)

Ligands

in contact, ≤ 4 Å

(3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACIDDP6

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF22700MVD-like_N

Diphosphomevalonate decarboxylase-like N-terminal domain

ClanCL0329S5

External Links

ECOD PDB View: 6N10 RCSB PDB: 6N10 PDBe: 6N10 UniProt: O23722

Downloads

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