ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6j3yD1 - ECOD Domain | ECOD

ECOD/Domains/e6j3yD1

e6j3yD1

UID: 002521101

PDB

Range: D:11-351
PDB: 6J3Y chain D(all domains)

Molecule: Photosystem II reaction center protein D2

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta-caroteneBCR
Chlorophyll aCLA
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DGD
FE (II) IONFE2
metal
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLELHG
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 6J3Y RCSB PDB: 6J3Y PDBe: 6J3Y

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Pheophytin aPHO

2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEPL9

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

+ 1 additive (Bicarbonate ion)

Bicarbonate ionBCT

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