ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6p97B2 - ECOD Domain | ECOD

ECOD/Domains/e6p97B2

e6p97B2

UID: 002523129

PDB

Range: B:23-64,B:162-265
PDB: 6P97 chain B(all domains)
UniProt: Q6XEC0 (all domains)
Gene: OXA-48

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL
(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carboxylic acidIM2

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6P97 RCSB PDB: 6P97 PDBe: 6P97 UniProt: Q6XEC0

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.