ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6h6lB1 - ECOD Domain | ECOD

ECOD/Domains/e6h6lB1

e6h6lB1

UID: 002524820

PDB

Range: B:228-530
PDB: 6H6L chain B(all domains)
UniProt: A7U694 (all domains)

Molecule: Capsid protein

3D Structure

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Related Domains

Browse other domains in Calici_coat_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyCalici_coat_C(10.2.1.43)

Ligands

in contact, ≤ 4 Å

Glycochenodeoxycholic AcidCHO
drugDrugBank DB02123
Magnesium ionMG
metal
Sodium ion

Pfam Families

PF08435Calici_coat_C

Calicivirus coat protein C-terminal

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 6H6L RCSB PDB: 6H6L PDBe: 6H6L UniProt: A7U694

Downloads

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metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.