ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6o5tA1 - ECOD Domain | ECOD

ECOD/Domains/e6o5tA1

e6o5tA1

UID: 002527769

PDB

Range: A:31-263
PDB: 6O5T chain A(all domains)
UniProt: Q9K2N0 (all domains)
Gene: blaVIM-2

Molecule: Beta-lactamase class B VIM-2

3D Structure

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Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

[(5,7-dibromo-2-oxo-1,2-dihydroquinolin-4-yl)methyl]phosphonic acidL8J
Zinc ionZN
metal

+ 1 additive (Acetate)

AcetateACT

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 6O5T RCSB PDB: 6O5T PDBe: 6O5T UniProt: Q9K2N0

Downloads

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DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.