ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2gagA8 - ECOD Domain | ECOD

ECOD/Domains/e2gagA8

e2gagA8

UID: 002528546

PDB

Range: A:1-128
PDB: 2GAG chain A(all domains)
UniProt: Q3ZDQ8 (all domains)
Gene: soxA

Molecule: heterotetrameric sarcosine oxidase alpha-subunit

3D Structure

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Related Domains

Browse other domains in Fer2_4 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyFer2_4(221.1.1.48)

Ligands

in contact, ≤ 4 Å

Flavin mononucleotideFMN
drugDrugBank DB03247within 5 Å only

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Pfam Families

2Fe-2S iron-sulfur cluster binding domain

ClanCL0486Fer2

External Links

ECOD PDB View: 2GAG RCSB PDB: 2GAG PDBe: 2GAG UniProt: Q3ZDQ8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.