ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5f4rA1 - ECOD Domain | ECOD

ECOD/Domains/e5f4rA1

e5f4rA1

UID: 002530521

PDB

Range: A:256-422,A:444-473
PDB: 5F4R chain A(all domains)
UniProt: C6G099 (all domains)
Gene: env

Molecule: ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein L31e-like(259)

HH-groupRibosomal protein L31e/gp120 outer domain(259.1)

TT-groupRibosomal protein L31e/gp120 outer domain(259.1.1)

FFamilyGP120(259.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-5-[[carbamimidoyl(methyl)amino]methyl]-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide5VF

+ 1 additive (Formic acid)

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 5F4R RCSB PDB: 5F4R PDBe: 5F4R UniProt: C6G099

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Formic acidFMT
DrugBank DB01942within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.