ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5f4uA1 - ECOD Domain | ECOD

ECOD/Domains/e5f4uA1

e5f4uA1

UID: 002530525

PDB

Range: A:256-422,A:444-473
PDB: 5F4U chain A(all domains)
UniProt: C6G099 (all domains)
Gene: env

Molecule: ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C

3D Structure

Loading viewer...

Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein L31e-like(259)

HH-groupRibosomal protein L31e/gp120 outer domain(259.1)

TT-groupRibosomal protein L31e/gp120 outer domain(259.1.1)

FFamilyGP120(259.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-6-[[carbamimidoyl(methyl)amino]methyl]-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide5VH

Shown in the structure viewer.

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 5F4U RCSB PDB: 5F4U PDBe: 5F4U UniProt: C6G099

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.