ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d4dN2 - ECOD Domain | ECOD

ECOD/Domains/e5d4dN2

e5d4dN2

UID: 002530717

PDB

Range: N:622-653,N:697-777
PDB: 5D4D chain N(all domains)
UniProt: Q8RQE8 (all domains)
Gene: rpoC

Molecule: DNA-directed RNA polymerase subunit beta'

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb1_2(1.1.2.2)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131within 5 Å only
Cytidine-5'-MonophosphateC5P
drugDrugBank DB03403

Pfam Families

PF00623RNA_pol_Rpb1_2

RNA polymerase Rpb1, domain 2

External Links

ECOD PDB View: 5D4D RCSB PDB: 5D4D PDBe: 5D4D UniProt: Q8RQE8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

within 5 Å only

Cytidine-5'-TriphosphateCTP

drugDrugBank DB02431within 5 Å only

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.