ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6atfE2 - ECOD Domain | ECOD

ECOD/Domains/e6atfE2

e6atfE2

UID: 002531485

PDB

Range: E:2-87
PDB: 6ATF chain E(all domains)

Molecule: MHC class II antigen

3D Structure

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Related Domains

Browse other domains in MHC_II_beta →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMHC antigen-recognition domain(233)

HH-groupMHC antigen-recognition domain(233.1)

TT-groupMHC antigen-recognition domain(233.1.1)

FFamilyMHC_II_beta(233.1.1.2)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 2 additives (Triethylene glycol, 1,2-ETHANEDIOL)

Triethylene glycolPGE
DrugBank DB02327

Pfam Families

PF00969MHC_II_beta

Class II histocompatibility antigen, beta domain

ClanCL0343MHC

External Links

ECOD PDB View: 6ATF RCSB PDB: 6ATF PDBe: 6ATF

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.