ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ek6A4 - ECOD Domain | ECOD

ECOD/Domains/e6ek6A4

e6ek6A4

UID: 002531968

PDB

Range: A:608-676
PDB: 6EK6 chain A(all domains)
UniProt: Q9UGL1 (all domains)
Gene: KDM5B

Molecule: Lysine-specific demethylase 5B,Lysine-specific demethylase 5B

3D Structure

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Related Domains

Browse other domains in KDM5_C-hel →

Classification

AArchitecturealpha bundles(a.7)

XX-groupC-terminal helical domain in Jumonji domain-containing histone demethylases(6171)

HH-groupC-terminal helical domain in Jumonji domain-containing histone demethylases(6171.1)

TT-groupC-terminal helical domain in Jumonji domain-containing histone demethylases(6171.1.1)

FFamilyKDM5_C-hel(6171.1.1.3)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metalwithin 5 Å only

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21323KDM5_C-hel

Lysine-specific demethylase 5, C-terminal helical domain

External Links

ECOD PDB View: 6EK6 RCSB PDB: 6EK6 PDBe: 6EK6 UniProt: Q9UGL1

Downloads

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