ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6fxmA1 - ECOD Domain | ECOD

ECOD/Domains/e6fxmA1

e6fxmA1

UID: 002532178

PDB

Range: A:533-738
PDB: 6FXM chain A(all domains)
UniProt: O60568 (all domains)
Gene: PLOD3

Molecule: Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

3D Structure

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Related Domains

Browse other domains in 2OG-FeII_Oxy, OGFOD2-like →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamily2OG-FeII_Oxy, OGFOD2-like(10.12.1.109)

Ligands

in contact, ≤ 4 Å

Oxogluric acidAKG
drugDrugBank DB08845
FE (II) IONFE2
metal
MANGANESE (II) ION

Pfam Families

PF031712OG-FeII_Oxy

2OG-Fe(II) oxygenase superfamily

ClanCL0029Cupin

PF25238OGFOD2-like

OGFOD2-like domain

External Links

ECOD PDB View: 6FXM RCSB PDB: 6FXM PDBe: 6FXM UniProt: O60568

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.