ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6hz0B1 - ECOD Domain | ECOD

ECOD/Domains/e6hz0B1

e6hz0B1

UID: 002532415

PDB

Range: B:5-195
PDB: 6HZ0 chain B(all domains)
UniProt: Q7NDN8 (all domains)
Gene: glvI

Molecule: Proton-gated ion channel

3D Structure

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Related Domains

Browse other domains in Neur_chan_LBD →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupNicotinic receptor ligand binding domain-like(11.12)

TT-groupNicotinic receptor ligand binding domain-like(11.12.1)

FFamilyNeur_chan_LBD(11.12.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal
Diundecyl phosphatidyl cholinePLC

+ 2 additives (Acetate, Dodecyl-beta-d-maltoside)

AcetateACT

Pfam Families

PF02931Neur_chan_LBD

Neurotransmitter-gated ion-channel ligand binding domain

ClanCL0974NLGIC_lig-bind

External Links

ECOD PDB View: 6HZ0 RCSB PDB: 6HZ0 PDBe: 6HZ0 UniProt: Q7NDN8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Dodecyl-beta-d-maltosideLMT

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.