ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6gelB1 - ECOD Domain | ECOD

ECOD/Domains/e6gelB1

e6gelB1

UID: 002533143

PDB

Range: B:307-555
PDB: 6GEL chain B(all domains)
UniProt: P42212 (all domains)
Gene: GFP

Molecule: Green fluorescent protein,Optimized Ratiometric Calcium Sensor,Green fluorescent protein,Green fluorescent protein

3D Structure

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Related Domains

Browse other domains in GFP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupGFP-like(271)

HH-groupGFP-like(271.1)

TT-groupGFP-like(271.1.1)

FFamilyGFP(271.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Formic acid, Glycerin, Tetraethylene glycol)

Formic acidFMT
DrugBank DB01942
GlycerinGOL
DrugBank DB09462
Tetraethylene glycol

Pfam Families

Green fluorescent protein

ClanCL0069GFP

External Links

ECOD PDB View: 6GEL RCSB PDB: 6GEL PDBe: 6GEL UniProt: P42212

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.