ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6havA1 - ECOD Domain | ECOD

ECOD/Domains/e6havA1

e6havA1

UID: 002534065

PDB

Range: A:243-342
PDB: 6HAV chain A(all domains)
UniProt: A6UVT1 (all domains)
Gene: hmd

Molecule: 5,10-methenyltetrahydromethanopterin hydrogenase

3D Structure

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Related Domains

Browse other domains in HMD →

Classification

AArchitecturealpha arrays(a.6)

XX-group6-phosphogluconate dehydrogenase C-terminal domain-like(129)

HH-group6-phosphogluconate dehydrogenase C-terminal domain-like(129.1)

TT-group6-phosphogluconate dehydrogenase C-terminal domain-like(129.1.1)

FFamilyHMD(129.1.1.8)

Ligands

in contact, ≤ 4 Å

1-{4-[(6S,6aR,7R)-3-amino-6,7-dimethyl-1-oxo-1,2,5,6,6a,7-hexahydro-8H-imidazo[1,5-f]pteridin-10-ium-8-yl]phenyl}-1-deoxy-5-O-{5-O-[(S)-{[(1S)-1,3-dicarboxypropyl]oxy}(hydroxy)phosphoryl]-alpha-D-ribofuranosyl}-D-ribitolE4M
Thiocyanate ionSCN
iron-guanylyl pyridinol cofactorFE9

Pfam Families

H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase

ClanCL01066PGD_C

External Links

ECOD PDB View: 6HAV RCSB PDB: 6HAV PDBe: 6HAV UniProt: A6UVT1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

within 5 Å only

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.