ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6havA2 - ECOD Domain | ECOD

ECOD/Domains/e6havA2

e6havA2

UID: 002534066

PDB

Range: A:1-242
PDB: 6HAV chain A(all domains)
UniProt: A6UVT1 (all domains)
Gene: hmd

Molecule: 5,10-methenyltetrahydromethanopterin hydrogenase

3D Structure

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Related Domains

Browse other domains in HMD_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyHMD_N(2003.1.1.83)

Ligands

in contact, ≤ 4 Å

1-{4-[(6S,6aR,7R)-3-amino-6,7-dimethyl-1-oxo-1,2,5,6,6a,7-hexahydro-8H-imidazo[1,5-f]pteridin-10-ium-8-yl]phenyl}-1-deoxy-5-O-{5-O-[(S)-{[(1S)-1,3-dicarboxypropyl]oxy}(hydroxy)phosphoryl]-alpha-D-ribofuranosyl}-D-ribitolE4M
iron-guanylyl pyridinol cofactorFE9
Sodium ionNA

Pfam Families

HMD N-terminal domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6HAV RCSB PDB: 6HAV PDBe: 6HAV UniProt: A6UVT1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Glycerol)

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.