ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6kkaA2 - ECOD Domain | ECOD

ECOD/Domains/e6kkaA2

e6kkaA2

UID: 002535163

PDB

Range: A:204-327
PDB: 6KKA chain A(all domains)
UniProt: Q9RC94 (all domains)
Gene: xynJ

Molecule: Endo-1,4-beta-xylanase

3D Structure

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Related Domains

Browse other domains in CBM_6 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupGalactose-binding domain-like(10.32)

TT-groupGalactose-binding domain-like(10.32.1)

FFamilyCBM_6(10.32.1.12)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 3 additives (HEPES, Glycerin, (4S)-2-METHYL-2,4-PENTANEDIOL)

HEPESEPE
DrugBank DB16872
GlycerinGOL

Pfam Families

Carbohydrate binding module (family 6)

ClanCL0202GBD

External Links

ECOD PDB View: 6KKA RCSB PDB: 6KKA PDBe: 6KKA UniProt: Q9RC94

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

(4S)-2-METHYL-2,4-PENTANEDIOLMPD

Shown in the structure viewer. Drug annotations from DrugDomain.