ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6mevF1 - ECOD Domain | ECOD

ECOD/Domains/e6mevF1

e6mevF1

UID: 002535443

PDB

Range: F:1-334
PDB: 6MEV chain F(all domains)
UniProt: Q6NYC1 (all domains)
Gene: JMJD6

Molecule: Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6

3D Structure

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Related Domains

Browse other domains in JmjC, Cupin_8 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC, Cupin_8(10.12.1.101)

Ligands

in contact, ≤ 4 Å

Oxogluric acidAKG
drugDrugBank DB08845
FE (III) IONFE
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

PF13621Cupin_8

Cupin-like domain

ClanCL0029Cupin

External Links

ECOD PDB View: 6MEV RCSB PDB: 6MEV PDBe: 6MEV UniProt: Q6NYC1

Downloads

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