ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6o5eB1 - ECOD Domain | ECOD

ECOD/Domains/e6o5eB1

e6o5eB1

UID: 002535619

PDB

Range: B:154-474
PDB: 6O5E chain B(all domains)
UniProt: P04004 (all domains)
Gene: VTN

Molecule: Vitronectin

3D Structure

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Related Domains

Browse other domains in Hemopexin →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group4-bladed(5.1.1)

FFamilyHemopexin(5.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal

+ 3 additives (Imidazole, Nitrate, Sulfate ion)

ImidazoleIMD

Pfam Families

PF00045Hemopexin

Hemopexin

External Links

ECOD PDB View: 6O5E RCSB PDB: 6O5E PDBe: 6O5E UniProt: P04004

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03366

NitrateNO3

DrugBank DB14049

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.