ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ojdB1 - ECOD Domain | ECOD

ECOD/Domains/e6ojdB1

e6ojdB1

UID: 002535923

PDB

Range: B:1697-1923
PDB: 6OJD chain B(all domains)
UniProt: Q5J1Q6 (all domains)
Gene: nocB

Molecule: NocB

3D Structure

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Related Domains

Browse other domains in Thioesterase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta-Hydrolases(7579)

HH-groupalpha/beta-Hydrolases(7579.1)

TT-groupalpha/beta-Hydrolases(7579.1.1)

FFamilyThioesterase(7579.1.1.10)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
(R)-[(S)-[(3S)-3-{[(2R)-2-amino-2-(4-hydroxyphenyl)acetyl]amino}-2-oxoazetidin-1-yl](4-hydroxyphenyl)methyl]methylphosphinic acidMUY

+ 1 additive (Glycerin)

Glycerin

Pfam Families

PF00975Thioesterase

Thioesterase domain

ClanCL0028AB_hydrolase

External Links

ECOD PDB View: 6OJD RCSB PDB: 6OJD PDBe: 6OJD UniProt: Q5J1Q6

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.